Distance Analysis and Dimensionality Reduction using PCA on Brain Tumour MRI Scans

Authors

DOI:

https://doi.org/10.4108/eetpht.10.5632

Keywords:

Dimensionality Reduction, Brain MRI Scans, Principal Component Analysis, Distance Analysis, Correlation Heatmap, Imaging Variance

Abstract

INTRODUCTION: Compression of MRI images while maintaining essential information, makes it easier to distinguish between different types of brain tumors. It also assesses the effect of PCA on picture representation modification and distance analysis between tumor classes.
OBJECTIVES: The objective of this work is to enhance the interpretability and classification accuracy of highdimensional MRI scans of patients with brain tumors by utilising Principle Component Analysis (PCA) to reduce their complexity.
METHODS:This study uses PCA to compress high-dimensional MRI scans of patients with brain tumors, focusing on improving classification using dimensionality reduction approaches and making the scans easier to understand.
RESULTS: PCA efficiently reduced MRI data, enabling better discrimination between different types of brain tumors and significant changes in distance matrices, which emphasize structural changes in the data.
CONCLUSION: PCA is crucial for improving the interpretability of MRI data.

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References

Figshare. Brain Tumor Dataset. [Internet]. Available from:https://figshare.com/articles/dataset/brain_tumor_dataset/1512427

Kavitha P, Jayagopal P, Sandeep Kumar M, MahamuniVS. A Novel Approach for Hybrid Image Segmentation GCPSO: FCM Techniques for MRI Brain Tumour Identification and Classification. Computational Intelligence and Neuroscience. 2022 Dec 23;2022.

Bal A, Banerjee M, Chakrabarti A, Sharma P. MRI brain tumor segmentation and analysis using roughfuzzy C-means and shape based properties. J King Saud Univ - Comput Inf Sci. 2022;34(2):115–33. doi:10.1016/j.jksuci.2018.11.001.

Kaushal, M., & Lohani, Q M D. (2022, January 1). Intuitionistic Fuzzy c-Ordered Means Clustering Algorithm. https://doi.org/10.1109/access.2022.3155869.

Alturki, N., Umer, M., Ishaq, A., Abuzinadah, N., Alnowaiser, K., Mohamed, A., Saidani, O., & Ashraf, I. (2023, March 14). Combining CNN Features with Voting Classifiers for Optimizing Performance of Brain Tumor Classification. https://doi.org/10.3390/cancers15061767.

Khairandish MO, Sharma M, Jain V, Chatterjee JM, Jhanjhi NZ. A hybrid CNN-SVM threshold segmentation approach for tumor detection and classification of MRI brain images. Irbm. 2022 Aug 1;43(4):290-9.

Nagaraju, K C., Jandhyala, N M., Konda, H., Maheen, F., Rapolu, R., Mudhunuri, A., & G, C P. (2022, November 22). Chatbot to predict need of a stent in cardiac treatment. https://doi.org/10.12688/f1000research.124054.1.

Sindhumol S, Kumar A, Balakrishnan K. Wavelet based Independent Component Analysis for multispectral brain tissue classification. In 2013 International Conference on Communication and Signal Processing 2013 Apr 3 (pp. 415-418). IEEE.

Nayan, A., Mozumder, A N., Haque, M., Sifat, F H., Mahmud, K R., Azad, A K., & Kibria, M G. (2023, February 1). A deep learning approach for brain tumor detection using magnetic resonance imaging. https://doi.org/10.11591/ijece.v13i1.pp1039-1047.

Rathi VPG. Brain tumor MRI image classification with feature selection and extraction using linear discriminant analysis. Int J Inf Sci Tech. 2012;2(4):131–46. doi:10.5121/ijist.2012.2413.

Duman A, Karakuş O, Sun X, Thomas S, Powell J, Spezi E. RFS+: A clinically adaptable and computationally efficient strategy for enhanced brain tumor segmentation. Cancers. 2023 Nov 28;15(23):5620.

Ameen, Y A., Badary, D M., Abonnoor, A E I., Hussain, K F., & Sewisy, A A. (2023, March 3). Which data subset should be augmented for deep learning? a simulation study using urothelial cell carcinoma histopathology images. https://doi.org/10.1186/s12859-023-05199-y.

El-Melegy, M T., Kamel, R., El-Ghar, M A., Shehata, M., Khalifa, F., & El-Baz, A. (2022, November 5). Kidney segmentation from DCE-MRI converging level set methods, fuzzy clustering and Markov random field modeling. https://doi.org/10.1038/s41598-022-23408-1.

Luo, W., Yin, Y., Liu, W., & Ren, H. (2023, January 16). Intramedullary spinal cord abscess with brain abscess due to subacute infective endocarditis. https://doi.org/10.1186/s12883-023-03050-8.

Stanowska, A., Wach, B., & Wnuk, M. (2019, January 1). Autoimmune encephalitis with anti-NMDAR antibodies in multiple myeloma – case report and literature review. https://doi.org/10.5114/ppn.2019.86259.

Cheng J, et al. Enhanced performance of Brain Tumor Classification via tumor region augmentation and partition. PLOS ONE. 2015. doi:10.1371/journal.pone.0140381.

Kumar, A., & Aithal, P S. (2022, November 4). Brain Diseases Detection and Prediction Using DeepQ Convolution Neural Network in Colab. https://doi.org/10.47992/ijhsp.2581.6411.0090.

Sherlin D, Murugan D. Brain Tumor segmentation using modified Fuzzy metric based Approach with Adaptive Technique. International Journal of Advanced Computer Science and Applications. 2019 Nov;8(6).

Zeinalkhani L, Jamaat AA, Rostami K. Diagnosis of brain tumor using combination of K-means clustering and genetic algorithm. Frontiers in Health Informatics. 2018 Nov 16;7:6.

Kaur D, Singh S, Mansoor W, Kumar Y, Verma S, Dash S, Koul A. Computational intelligence and metaheuristic techniques for brain tumor detection through IoMTenabled MRI devices. Wireless Communications and Mobile Computing. 2022 Jan 18;2022:1-20.

Bahadure NB, Ray AK, Thethi HP. Image analysis for MRI based brain tumor detection and feature extraction using biologically inspired BWT and SVM. Int J Biomed Imaging. 2017:9749108. doi:10.1155/2017/9749108.

Latif G, Iskandar DA, Alghazo JM, Mohammad N. Enhanced MR image classification using hybrid statistical and wavelets features. Ieee Access. 2018 Dec 18;7:9634-44.

Soomro TA, et al. Image segmentation for MR brain tumor detection using machine learning: A Review. IEEE Rev Biomed Eng. 2023;16:70–90. doi:10.1109/rbme.2022.3185292.

Susanto, A., Sari, C A., Rahmalan, H., & Doheir, M. (2023, June 1). Support vector machine based discrete wavelet transform for magnetic resonance imaging brain tumor classification. https://doi.org/10.12928/telkomnika.v21i3.24928.

Vinisha, A., & Boda, R. (2022, July 30). Detection and classification of tumor in brain using visual geometry group. https://doi.org/10.53730/ijhs.v6ns5.11302.

Abdelaziz S, Lu S. K-means algorithm with level set for brain tumor segmentation. Indonesian Journal of Electrical Engineering and Computer Science. 2019 Aug;15(2):991-1000.

Chung, Y W., & Choi, I Y. (2023, January 31). Detection of abnormal extraocular muscles in small datasets of computed tomography images using a three-dimensional variational autoencoder. https://doi.org/10.1038/s41598-023-28082-5.

Ahmed, A., Almagrabi, A O., & Osman, A H. (2022, December 1). Pre-trained convolution neural networks models for content-based medical image retrieval. https://doi.org/10.21833/ijaas.2022.12.002.

Dong, D., Fu, G., Li, J., Pei, Y., & Chen, Y. (2022, November 1). An unsupervised domain adaptation brain CT segmentation method across image modalities and diseases. https://doi.org/10.1016/j.eswa.2022.118016.

Baur C, et al. Modeling healthy anatomy with artificial intelligence for unsupervised anomaly detection in brain MRI. Radiol Artif Intell. 2021;3(3). doi:10.1148/ryai.2021190169.

Chen, Z., Kulkarni, P., Galatzer-Levy, I R., Bigio, B., Nasca, C., & Yu, Z. (2022, November 1). Modern views of machine learning for precision psychiatry. https://doi.org/10.1016/j.patter.2022.100602.

Rinesh, S., Maheswari, K., Arthi, B., Sherubha, P., Vijay, A., Sridhar, S., Rajendran, T., & Waji, Y A. (2022, February 14). Investigations on Brain Tumor Classification Using Hybrid Machine Learning Algorithms. https://doi.org/10.1155/2022/2761847.

Furuse, M., Ikeda, N., Kawabata, S., Park, Y., Takeuchi, K., Fukumura, M., Tsuji, Y., Kimura, S., Kanemitsu, T., Yagi, R., Nonoguchi, N., Kuroiwa, T., & Wanib

DuW, Yin K, Shi J. Dimensionality Reduction Hybrid UNet for Brain Extraction in Magnetic Resonance Imaging. Brain Sciences. 2023 Nov 4;13(11):1549.

Alla SS, Athota K. Brain tumor detection using transfer learning in Deep learning. Indian J Sci Technol. 2022;15(40):2093–2102. doi:10.17485/ijst/v15i40.1307.

Gokila Brindha P, Kavinraj M, Manivasakam P, Prasanth P. Brain tumor detection from MRI images using Deep Learning Techniques. IOP Conf Ser: Mater Sci Eng. 2021;1055(1):012115. doi:10.1088/1757-899x/1055/1/012115.

Cheng J, Yang W, Huang M, Huang W, Jiang J, Zhou Y, Yang R, Zhao J, Feng Y, Feng Q, Chen W. Retrieval of brain tumors by adaptive spatial pooling and fisher vector representation. PloS one. 2016 Jun 6;11(6):e0157112.

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Published

04-04-2024

How to Cite

1.
Jhariya A, Parekh D, Lobo J, Bongale A, Jayaswal R, Kadam P, Patil S, Choudhury T. Distance Analysis and Dimensionality Reduction using PCA on Brain Tumour MRI Scans. EAI Endorsed Trans Perv Health Tech [Internet]. 2024 Apr. 4 [cited 2024 May 3];10. Available from: https://publications.eai.eu/index.php/phat/article/view/5632